Public Library of Science (PLoS)
Potent, multi-target serine protease inhibition achieved by a simplified β-sheet motif
Volume: 14, Issue: 1
DOI 10.1371/journal.pone.0210842




Engagement of an extended β-sheet is a common substrate/inhibitor interaction at the active site of serine proteases and is an important feature of Laskowski mechanism inhibitors that present a substrate-like loop to a target protease. This loop is cleaved but subsequently relegated forming a stable inhibitor/protease complex. Laskowski inhibitors are ubiquitous in nature and are used extensively in serine protease inhibitor design. However, most studies concentrate on introducing new sidechain interactions rather than the direct contributions of the substrate-like β-sheet to enzyme inhibition. Here we report the crystal structure of an simplified β-sheet inhibitory motif within the Sunflower Trypsin Inhibitor (SFTI) in complex with trypsin. We show that the intramolecular hydrogen bond network of this SFTI variant (SFTI-TCTR) engages the inhibitor sidechains that would normally interact with a target protease, giving mainchain interactions a more prominent role in complex formation. Despite having reduced sidechain interactions, this SFTI variant is remarkably potent and inhibits a diverse range of serine proteases. Crystal structural analysis and molecular modelling of SFTI-TCTR complexes again indicates an interface dominated by β–sheet interactions, highlighting the importance of this motif and the adaptability of SFTI as a scaffold for inhibitor design., multi-target serine protease inhibition achieved by a simplified β-sheet motif&author=&keyword=&subject=Research Article,Biology and life sciences,Biochemistry,Enzymology,Enzymes,Proteases,Serine proteases,Biology and life sciences,Biochemistry,Proteins,Enzymes,Proteases,Serine proteases,Biology and life sciences,Biochemistry,Enzymology,Enzymes,Proteases,Biology and life sciences,Biochemistry,Proteins,Enzymes,Proteases,Physical sciences,Chemistry,Physical chemistry,Chemical bonding,Hydrogen bonding,Physical sciences,Physics,Condensed matter physics,Solid state physics,Crystallography,Crystal structure,Physical sciences,Chemistry,Chemical compounds,Organic compounds,Amino acids,Basic amino acids,Arginine,Physical sciences,Chemistry,Organic chemistry,Organic compounds,Amino acids,Basic amino acids,Arginine,Biology and life sciences,Biochemistry,Proteins,Amino acids,Basic amino acids,Arginine,Physical sciences,Chemistry,Computational chemistry,Molecular dynamics,Physical sciences,Materials science,Materials,Crystals,Biology and life sciences,Biochemistry,Enzymology,Enzyme inhibitors,